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Table 1 Summary of assembly and annotation of two haplotype genomes in upland switchgrass

From: New insights into the cold tolerance of upland switchgrass by integrating a haplotype-resolved genome and multi-omics analysis

 

JJ31-A

JJ31-B

Contig N50 (Mb)

27.05

25.98

Contig length (Mb)

1124.57

1136.95

Scaffold N50 (Mb)

67.96

62.02

Scaffold length (Mb)

1143.31

1110.80

Chromosome anchoring rate (%)

98.47

99.02

Gene no

79,672

79,416

Repeat sequence length (Mb)

619.58

594.02

Repeat ratio (%)

54.19

53.48

QV

45.16

50.27