Volume 12 Supplement 1

Beyond the Genome 2011

Meeting abstracts

Beyond the Genome 2011. Go to conference site.

Washington, DC, USA19-22 September 2011

Concatenated PDF 12S1

Page 1 of 3

Analysis of 2,440 human exomes highlights the evolution and functional impact of rare coding variation

Authors: Joshua Akey

Citation: Genome Biology 2011 12(Suppl 1):I1

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Characterizing triple-negative breast cancer tumors

Authors: Sam Aparicio

Citation: Genome Biology 2011 12(Suppl 1):I2

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Are clinical genomes already becoming semi-routine for patient care?

Authors: Mark Boguski

Citation: Genome Biology 2011 12(Suppl 1):I3

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Interrogating the architecture of cancer genomes

Authors: Peter Campbell

Citation: Genome Biology 2011 12(Suppl 1):I4

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Genome-forward oncology: how do we get there?

Authors: Matthew Ellis

Citation: Genome Biology 2011 12(Suppl 1):I5

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
NIAID genomics programs and global health

Authors: Maria Y Giovanni

Citation: Genome Biology 2011 12(Suppl 1):I6

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Microbial reference genomes for human metagenomics

Authors: Sarah K Highlander

Citation: Genome Biology 2011 12(Suppl 1):I7

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Exome sequencing as a tool to discover genes for heart attack risk and blood lipids

Authors: Sekar Kathiresan

Citation: Genome Biology 2011 12(Suppl 1):I8

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Next-generation clinical sequencing in a children’s hospital

Authors: Stephen Kingsmore

Citation: Genome Biology 2011 12(Suppl 1):I9

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
A glimpse at tumor genome evolution

Authors: Elaine R Mardis

Citation: Genome Biology 2011 12(Suppl 1):I10

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Progress in understanding the human microbiome

Authors: Karen Nelson

Citation: Genome Biology 2011 12(Suppl 1):I11

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Comparative genomic analysis of mouse and human mammary tumors

Authors: Charles M Perou

Citation: Genome Biology 2011 12(Suppl 1):I12

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Reconstructing microbial communities

Authors: Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):I13

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Next-generation human genetics

Authors: Jay Shendure

Citation: Genome Biology 2011 12(Suppl 1):I14

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Metatranscriptomics of the human gut microbiome

Authors: Thomas Sichertz Pontén

Citation: Genome Biology 2011 12(Suppl 1):I15

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
De novo mutations in mental retardation

Authors: Joris A Veltman

Citation: Genome Biology 2011 12(Suppl 1):I16

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
Comparative analysis of the vaginal microbiome in health and disease

Authors: Bryan A White, Andres M Gomez, Mengfei Ho, Margret Berg Miller, Susan M Thomas, Carl J Yeoman, Suleyman Yildirim, Douglas J Creedon, Tony L Goldberg, Steven R Leigh, Karen E Nelson, Rebecca M Stumpf and Brenda A Wilson

Citation: Genome Biology 2011 12(Suppl 1):I17

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
The Joint Center for Structural Genomics: exploration of the human gut microbiome

Authors: Ian Wilson

Citation: Genome Biology 2011 12(Suppl 1):I18

Content type: Invited speaker presentation Published on: 19 September 2011
- View Full Text
- View PDF
RNA-Seq methods for imperfect samples: development, evaluation and applications

Authors: Xian Adiconis, Lin Fan, David DeLuca, Andrey Sivachenko, Nathalie Pochet, Aaron Berlin, Sarah Young, Gad Getz, Aviv Regev, Chad Nusbaum, Andreas Gnirke and Joshua Z Levin

Citation: Genome Biology 2011 12(Suppl 1):P1

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Viral diversity in children with diarrhea in Gambia

Authors: Irina Astrovskaya, Bo Liu and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P2

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
COSMIC: the catalogue of somatic mutations in cancer

Authors: Nidhi Bindal, Simon A Forbes, David Beare, Prasad Gunasekaran, Kenric Leung, Chai Yin Kok, Mingming Jia, Sally Bamford, Charlotte Cole, Sari Ward, Jon Teague, Michael R Stratton, Peter Campbell and Andrew P Futreal

Citation: Genome Biology 2011 12(Suppl 1):P3

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
A novel functional variant in 8q24 is associated with regulation of prostate stem cell antigen (PSCA) gene expression and bladder cancer risk

Authors: Yi-Ping Fu, Indu Kohaar, Adam Mumy, Wei Tang, Brian Muchmore, Patricia Porter-Gill, Luyang Liu, Jonine Figueroa, Montserrat Garcia-Closas, Dalsu Baris, Mark Purdue, Michael Thun, Demetrius Albanes, Nuria Malats, Francisco X Real, Manolis Kogevinas…

Citation: Genome Biology 2011 12(Suppl 1):P4

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Evaluating short-read sequence data from the highly redundant, novel transcriptome of Polarella glacialis

Authors: Theodore R Gibbons, Gregory T Concepcion, Tsvetan R Bachvaroff and Charles F Delwiche

Citation: Genome Biology 2011 12(Suppl 1):P5

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
A cost-effective and universal strategy for complete prokaryotic genome sequencing proposed by computer simulation

Authors: Jingwei Jiang, Jun Li and Frederick C Leung

Citation: Genome Biology 2011 12(Suppl 1):P6

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Functional exploration of CCNE1 splicing forms as a possible link to bladder cancer susceptibility

Authors: Indu Kohaar, Alexandra Scott-Johnson, Yi-Ping Fu, Patricia Porter-Gill and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P7

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
ScaffViz: visualizing metagenome assemblies

Authors: Sergey Koren, Todd Treangen and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P8

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

Authors: David M Kristensen, Arcady R Mushegian and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P9

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Genetic basis of common human disease: insight into the role of nonsynonymous SNPs from genome-wide association studies

Authors: Lipika R Pal and John Moult

Citation: Genome Biology 2011 12(Suppl 1):P10

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

Authors: Bo Liu, Theodore Gibbons, Mohammad Ghodsi, Todd Treangen and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P11

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
The mechanisms and possible significance of upregulation of stomatin expression by hypoxia and/or glucocorticoids

Authors: Ji-Cheng Chen, Hao-Yu Cai, Yan Wang, Yuan-Yuan Ma, Liang-Nian Song, Dong-mei Cao, Fei Diao, Yi-Dong Li and Jian Lu

Citation: Genome Biology 2011 12(Suppl 1):P12

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Massively parallel sequencing identifies a previously unrecognized X-linked disorder resulting in lethality in male infants owing to amino-terminal acetyltransferase deficiency

Authors: Alan F Rope, Kai Wang, Rune Evjenth, Jinchuan Xing, Jennifer J Johnston, Jeffrey J Swensen, Evan W Johnson, Barry Moore, Chad D Huff, Lynne M Bird, John C Carey, John M Opitz, Cathy A Stevens, Christa Schank, Deborah Heidi Fain, Reid Robison…

Citation: Genome Biology 2011 12(Suppl 1):P13

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Evolutionary and functional relationships revealed by the dha regulon predicted by genomic context analysis

Authors: Marinalva Martins-Pinheiro, Wanessa Cristina Lima, Cláudio A Oller and Carlos FM Menck

Citation: Genome Biology 2011 12(Suppl 1):P14

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Prostate stem cell antigen (PSCA) and risk of bladder cancer: linking genotypes to functional mechanisms

Authors: Adam Mumy, Indu Kohaar, Patricia Porter-Gill, Wei Tang, Yi-Ping Fu and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P15

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Metabolic pathways are affected differently in Saccharomyces cerevisiae thiol peroxidase mutants during redox stress with hydrogen peroxide

Authors: Amy L Olex, Brian M Westwood, Leslie B Poole and Jacquelyn S Fetrow

Citation: Genome Biology 2011 12(Suppl 1):P16

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Metastats: an improved statistical method for analysis of metagenomic data

Authors: Joseph N Paulson, Mihai Pop and Hector Corrada Bravo

Citation: Genome Biology 2011 12(Suppl 1):P17

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Detection of bladder, breast and prostate cancer using serum and tissue miRNA profiling

Authors: Patricia Porter-Gill, Yi-Ping Fu, Alpana Kaushiva, Douglas Price, William Dahut, William Figg and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P18

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
An unusual suspect: an uncommon human-specific synonymous coding variant within the UGT1A6 gene explains a GWAS signal and protects against bladder cancer

Authors: Wei Tang, Yi-Ping Fu, Jonine D Figueroa, Núria Malats, Montserrat Garcia-Closas, Nilanjan Chatterjee, Manolis Kogevinas, Dalsu Baris, Michael Thun, Jennifer L Hall, Immaculata De Vivo, Demetrius Albanes, Patricia Porter-Gill, Mark P Purdue, Laurie Burdett, Luyang Liu…

Citation: Genome Biology 2011 12(Suppl 1):P19

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
A comprehensive census of horizontal gene transfers from prokaryotes to unikonts

Authors: Pere Puigbò, Sergei Mekhedov, Yuri I Wolf and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P20

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
A genetic survival network for glioblastoma multiforme

Authors: Andy Lin and Desmond J Smith

Citation: Genome Biology 2011 12(Suppl 1):P21

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Building a protein interaction (PIN) database for autism candidate genes

Authors: Catherine Croft Swanwick and Sharmila Banerjee-Basu

Citation: Genome Biology 2011 12(Suppl 1):P22

Content type: Poster Presentation Published on: 19 September 2011
- View Full Text
- View PDF
Whole transcriptome sequencing of normal and tumor bladder tissue samples

Authors: Wei Tang and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P23

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets

Authors: McAnthony Tarway, Wei Tang and Ludmila Prokunina-Olsson

Citation: Genome Biology 2011 12(Suppl 1):P24

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

Authors: Todd J Treangen, Sergey Koren, Irina Astrovskaya, Dan Sommer, Bo Liu and Mihai Pop

Citation: Genome Biology 2011 12(Suppl 1):P25

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
The mutation spectrum in Indian patients with Gaucher disease

Authors: Vartika Bisariya, Pramod K Mistry, Jun Liu, Madhumita Roy Chaudhari, Neerja Gupta and Madhulika Kabra

Citation: Genome Biology 2011 12(Suppl 1):P26

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Boundary distinction interpretation of microarray data via discrete correlate summation

Authors: Brian M Westwood, Amy L Olex, James L Norris, Leslie B Poole and Jacquelyn S Fetrow

Citation: Genome Biology 2011 12(Suppl 1):P27

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
A computational approach to identify transposable element insertions in cancer cells

Authors: Israel T Silva, Daniel G Pinheiro and Wilson A Silva Jr

Citation: Genome Biology 2011 12(Suppl 1):P28

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Joint analysis of genome-wide genetic variants associated with gene expression and disease susceptibility

Authors: Chen-Hsin Yu and John Moult

Citation: Genome Biology 2011 12(Suppl 1):P29

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Phylogenomics of prokaryotic ribosomal proteins

Authors: Natalya Yutin, Kira S Makarova, Yuri I Wolf and Eugene V Koonin

Citation: Genome Biology 2011 12(Suppl 1):P30

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Genomes in a bottle: creating standard reference materials for genomic variation - why, what and how?

Authors: Justin M Zook and Marc Salit

Citation: Genome Biology 2011 12(Suppl 1):P31

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF
Deciphering the reproductive protein-protein interaction network in Anopheles gambiae with Drosophila melanogaster as a framework

Authors: Daniel Achinko, Paul Mireji, Flaminia Catteruccia and Dan Masig

Citation: Genome Biology 2011 12(Suppl 1):P32

Content type: Poster presentation Published on: 19 September 2011
- View Full Text
- View PDF

Beyond the Genome 2011

Meeting abstracts

Annual Journal Metrics

Peer Review Taxonomy

Genome Biology

Contact us