Fig. 2

Mapping of the Motley variant. A Pedigree of the two families that were used separately and combined for the mapping of the motley allele. No mapping was performed for the stripe allele, because it corresponds to the same locus as the motley allele. B Each family separately and the two families combined were mapped both to the Hi-C and the CU assembly. C Proportion of co-segregating variants with the Motley locus (y-axis) in the two families combined when mapped to the Hi-C assembly. Proportions are calculated with a 1-Mb sliding window and a step of 100 kb. Scaffolds are alternatively colored in red and black. D Proportion of co-segregating variants in the interval between 91.4 and 97.1 Mb on Scaffold 6 (s6) of the Hi-C assembly based on the combined dataset. Proportions are calculated with a 1-Mb sliding window and a step of 100 Kb. The position of the main candidate gene (CLCN2) is highlighted in yellow. E Proportion of co-segregating variants with the Motley locus (y-axis) in the two families combined when mapped to the CU assembly. Proportions are calculated with a 1-Mb sliding window and a step of 100 kb. Scaffolds are alternatively colored in red and black. F Proportion of co-segregating variants in the 3.4 Mb interval on Super-scaffolds 412 (61.6–64.1 Mb) and 451 (reverse complement from 2 to 1.1 Mb) of the CU assembly based on the combined dataset. Proportions are calculated with a 1-Mb sliding window and a step of 100 Kb. The position of the main candidate gene (CLCN2) is highlighted in yellow