Fig. 8
From: SMORE: spatial motifs reveal patterns in cellular architecture of complex tissues
Spatial motif analysis of a 200 \(\upmu\)m slice of mouse hypothalamus. a The graph of 3D MERFISH dataset with classified cell subtypes shown as dots colored by subtype. The perpendicular views from different angles are shown alongside the 3D view for the primary graph. Epen, ependymal cells; ASC, astrocytes; OGC, oligodendrocytes. Excitatory and inhibitory subtypes started with E and I letter, respectively. b The first 20 spatial motifs obtained using global shuffling to generate the control data. c The first 5 output motifs along with their highlighted nodes on the tissue graph, and their respective log p values. Annotations are the same as Fig. 6 for the shared cell types