Fig. 2
From: Promoter capture Hi-C identifies promoter-related loops and fountain structures in Arabidopsis
Promoters interact with gene body, intergenic, and proximal promoter regions. A Violin plot and corresponding box plot represent the length distribution of promoter-related loops in individual chromosomes. The median length of promoter-related loops is labeled at the top left of the panel. B Bar plot indicates the relative abundances of intra-chromosomal and inter-chromosomal promoter-related loops in individual chromosomes. C, D, and E Gene body (C), intergenic (D), and proximal promoter (E) loops are shown. Red, green, and blue boxes represent the gene body, intergenic, and proximal promoter regions, respectively. F Motifs enriched in the gene body (top), intergenic (middle), and proximal promoter (bottom) regions are shown. Transcription factors recognizing the top four ranked motifs and their corresponding P-values are indicated