Fig. 4

PMD-correction performances of mapDamage2, ATLAS, snpAD, trimBam, and bamRefine on 10X simulated ancient genomes with medium damage (35% at 5’C), calculated by comparing diploid calls with true genotypes (Additional file 1: Fig. S24). “NTPR” stands for non-reference true positive rate, “FN” for false negatives, “FP” for false positives. We used reads with MAPQ > 30 for genotyping. To compare results with MAPQ > 25, see Additional file 1: Fig. S26