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Fig. 3 | Genome Biology

Fig. 3

From: Seqrutinator: scrutiny of large protein superfamily sequence datasets for the identification and elimination of non-functional homologues

Fig. 3

Seqrutinator performance on 19 BAHDomes, CYPomes, and UGTomes. A Taxonomy of selected species. 1, embryophytes (land plants); 2, spermatopsida (seed plants); 3, angiosperms (flowering plants); 4, monocots; 5, eudicots; 6, asterids; 7, rosids. B Numbers of BAHD, CYP, and UGT homologues per species found (input) and retained after each step of the default Seqrutinator pipeline. C Number of removed sequences. Shown are the numbers of the initial and finally accepted sequences as well as the number of removed sequences, per module and superfamily (B: BAHD, C: CYP and U: UGT). Red shading indicates a proportionally high number of NFH was removed (see also main text and Additional file 3: Supplemental Table S1, SSR, GIR, and CGSR only). D Seqrutinator performance for BAHDomes, CYPomes, and UGTomes. Bars show the proportions of the number of finally accepted sequences over the number of initial sequences. Species in B, C, and D are presented by three letter codes according to A. Ath10 and Ath6 indicate proteome versions 10 and 6 of Ath. SP, SwissProt; SPC, SwissProt Curated

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Genome Biology

ISSN: 1474-760X

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