Fig. 2

Performance of SV detection pipelines in different SV types (CCS). Precision and recall of DEL, DUP, INS, INV, and BND were determined with the simulated (a, c (consider genotypes)) and the real data (b, d (consider genotypes)). F1 measures, which combine precision and recall statistics (see the “Methods” section for details), are depicted for pipelines distinguished by different colored bars. Pipelines are categorized according to the alignment tools (lra, minimap2, ngmlr, pbmm2, winnowmap)