Fig. 4
From: Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis
Panpipes reference mapping allows evaluation of multiple reference datasets. A UMAP of unimodal Q2R integration between the query dataset (orange) and the PBMC_R1 reference dataset (blue) using scANVI. B UMAP of multimodal Q2R integration between the query dataset (orange) and the PBMC_R2 reference dataset (blue) using totalVI. C UMAP of multimodal Q2R integration between the query dataset (orange) and the PBMC_R3 reference dataset (blue) using totalVI. D Query to PBMC_R1 label transfer concordance with predicted (reference-derived) labels on the x-axis and observed (query-derived) labels on the y-axis. E Query to PBMC_R2 label transfer concordance with predicted (reference-derived) labels on the x-axis and observed (query-derived) labels on the y-axis. F Query to PBMC_R3 label transfer concordance with predicted (reference-derived) labels on the x-axis and observed (query-derived) labels on the y-axis. G Label conservation scoring using scIB metrics for each Q2R integration