Fig. 2
From: Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis
Cell-surface protein QC metric visualizations generated by Panpipes. A Expression (log2 of raw counts) of cell-surface protein markers in cells (foreground, red) versus empty droplets (background, blue). Dots represent mean expression and lines show the standard error of the mean. B Distribution of cell-surface protein marker expression after CLR normalization. C Distribution of cell-surface protein marker expression after dsb normalization. D Joint distribution plot of cell-surface protein marker expression normalized by CLR (x-axis) versus dsb (y-axis). E Joint distribution plot of RNA (x-axis) versus the cell-surface protein (encoded by the RNA; y-axis) in cells (red) versus empty droplets (blue). Expression of the RNA and protein is plotted as the log of the total counts (per cell barcode)