Skip to main content
Fig. 7 | Genome Biology

Fig. 7

From: Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples

Fig. 7

Summary of somatic SVs detected in two or more replicates by four short-read callers on HCC1395BL_v1.0 as compared to GRCh38. A Counts of somatic SVs detected in two or more replicates by GRIDSS2, Manta, Delly, and novoBreak on HCC1395BL_v1.0 reference as opposed to GRCh38. B Counts of GRCh38-based somatic SVs with support from two or more replicates that were mapped to HCC1395BL_v1.0-based SVs. C Counts of GRCh38-based somatic SVs with support from two or more replicates that were unmapped or no matching SVs on the HCC1395BL_v1.0 reference (GRCh38 specific SVs). D Counts of HCC1395BL_v1.0-based somatic SVs with support from two or more replicates that had no mapped GRCh38-based SVs in corresponding locations on HCC1395BL_v1.0 reference (personalized genome-specific SVs)

Back to article page

Genome Biology

ISSN: 1474-760X

Contact us