Fig. 5

Phenotypic analysis of cheRNAs. A The percentages of phenotypes associated with the cheRNA insertion mutants. The organ size and small/aborted seed phenotypes are represented in the schematic diagram. B Examples of association analysis of che-lincRNAs OsCHENAT1564 and OsCHELIN0935 with various agricultural traits. The rice species conservation phastCons scores and their 11 way whole-genome alignments were visualized in IGV. The Manhattan plots show SNPs around che-lincRNA genomic regions that are significantly associated with various traits