Fig. 2

A schematic diagram for read phasing and super read generation in a read cluster. The blue reads belong to haplotype 1, and the orange reads belong to haplotype 2. The bold sky blue read means that this read is a seed read. We use WhatsHap to separate reads into two different groups based on SNPs involved in long reads. The dash line regions in super reads represent the bases with sequencing low coverage, which can be optionally trimmed to generate corrected super reads