Fig. 1

Overview of PRINCESS. A General workflow of PRINCESS from read input through phased variant calls, with optional steps indicated in red font. B F1-score Benchmarking results for SNVs, indels, and SVs based on HG002 GIAB gold standard across PacBio HiFi, PacBio Continuous Long Read (CLR), and ONT data. C Improved SNV calling of PRINCESS based on its automated SNV filtering compared to Clair2 [39] and Longshot [30]