Fig. 5
Candidate adaptive and archaic introgressed structural variations. Joint distributions of fixation index (FST) statistics for the population-stratified structural variations (SVs) (x-axis), p-values for positive selection (integrated haplotype homozygosity score [iHS], top row), Denisovan introgression (fd-statistic, middle row), and Neanderthal introgression (fd-statistic, bottom row). SVs that show signatures of both selection and introgression (purple circles) are distinguished from the variants that show signatures of selection (blue circles) or introgression (green circles) only. The p-values point to the most significant and closest windows to SVs (±500 kb)