Fig. 4

Results from chromosome-9 NA12878 simulation when using an ethnicity-specific (“CEU”) versus a pan-ethnic (“All”) augmented reference. Reads are 100 nt and unpaired and the plots have similar axes as the plots in Fig. 1 panels a–c. Since we are assessing two ethnicities, each with a different total number of variants, the horizontal axes in panels a and b and the peak points in panel (c) are labeled with absolute number of variants included rather than percentages