Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

Table 2 Teams

Team ID	Method name	Institute
Standard	BreakDancer	Challenge Administrators
Team 1	Delly¹	European Molecular Biology Laboratory (EMBL)
Team 2	Manta	Illumina, Inc.
Team 3	Meerkat	Harvard Medical School
Team 4	novoBreak	MD Anderson Cancer Center
Team 5	deStruct²	BC Cancer Agency Research Centre
Team 6	SWAN	Wharton School
Team 7	SmuFin	Barcelona Supercomputing Center
Team 8	not available	Peking University
Team 9	deStruct²	Simon Fraser University
Team 10	GROM	Rutgers University
Team 11	Pindel	McDonnell Genome Institute
Team 12	PAVFinder	Canada’s Michael Smith Genome Sciences Centre
Team 13	Delly¹	Georgetown University Medical Center, National Cancer Institute
Team 14	Subread	Walter and Eliza Hall Institute of Medical Research
Team 15	CX	Wharton School

Teams that made submissions for IS1, IS2, and/or IS3, the names of the SV detection methods they used, and the institutes to which they belong
¹Delly was developed by Team 1 and also used by Team 13
²deStruct was developed by Team 9 and also used by Team 5

ISSN: 1474-760X